CRAN Package Check Results for Package TreatmentPatterns

Last updated on 2024-02-27 06:50:47 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.6.5 21.19 550.59 571.78 NOTE
r-devel-linux-x86_64-debian-gcc 2.6.5 15.85 416.12 431.97 NOTE
r-devel-linux-x86_64-fedora-clang 2.6.5 668.56 NOTE
r-devel-linux-x86_64-fedora-gcc 2.6.5 698.53 NOTE
r-devel-windows-x86_64 2.6.4 16.00 283.00 299.00 ERROR
r-patched-linux-x86_64 2.6.5 14.59 553.69 568.28 NOTE
r-release-linux-x86_64 2.6.5 12.85 548.92 561.77 NOTE
r-release-macos-arm64 2.6.5 158.00 NOTE
r-release-macos-x86_64 2.6.5 424.00 NOTE
r-release-windows-x86_64 2.6.5 21.00 449.00 470.00 NOTE
r-oldrel-macos-arm64 2.6.5 156.00 NOTE
r-oldrel-windows-x86_64 2.6.5 22.00 520.00 542.00 NOTE

Check Details

Version: 2.6.5
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'Eunomia', 'CohortGenerator', 'CirceR', 'Capr' Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 2.6.4
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'Eunomia', 'CohortGenerator', 'CirceR', 'Capr' Flavor: r-devel-windows-x86_64

Version: 2.6.4
Check: tests
Result: ERROR Running 'testthat.R' [105s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(TreatmentPatterns) > > test_check("TreatmentPatterns") Starting 2 test processes [ FAIL 16 | WARN 0 | SKIP 35 | PASS 68 ] ══ Skipped tests (35) ══════════════════════════════════════════════════════════ • On CRAN (35): 'test-CDMInterfaceDBC.R:8:3', 'test-CDMInterfaceDBC.R:27:3', 'test-CDMInterfaceDBC.R:40:3', 'test-CDMInterfaceDBC.R:67:3', 'test-CDMInterfaceDBC.R:93:3', 'test-CDMInterfaceDBC.R:129:3', 'test-PathwayConstructor.R:5:3', 'test-PathwayConstructor.R:20:3', 'test-PathwayConstructor.R:38:3', 'test-PathwayConstructor.R:59:3', 'test-PathwayConstructor.R:76:3', 'test-executeTreatmentPatterns.R:9:3', 'test-executeTreatmentPatterns.R:47:3', 'test-export.R:30:3', 'test-export.R:77:3', 'test-export.R:126:3', 'test-export.R:169:3', 'test-export.R:210:3', 'test-export.R:283:3', 'test-export.R:328:3', 'test-export.R:374:3', 'test-export.R:415:3', 'test-export.R:454:3', 'test-export.R:526:3', 'test-computePathways.R:9:3', 'test-computePathways.R:33:3', 'test-computePathways.R:55:3', 'test-computePathways.R:76:3', 'test-computePathways.R:120:3', 'test-computePathways.R:136:3', 'test-computePathways.R:152:3', 'test-computePathways.R:190:3', 'test-computePathways.R:206:3', 'test-computePathways.R:238:3', 'test-computePathways.R:364:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-computePathways.R:270:3'): minPostCombinationDuration: 30 ────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 3 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-computePathways.R:270:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:23:3'): A ──────────────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 2 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:23:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:74:3'): A-B ────────────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 3 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:74:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:127:3'): A-B-C ─────────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 4 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:127:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:179:3'): A-B+C ─────────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 4 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:179:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:231:3'): A+B-C ─────────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 4 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:231:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:283:3'): A-A+B ─────────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 4 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:283:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:336:3'): A-B-A-B ───────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 5 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:336:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:388:3'): A-B-A ─────────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 4 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:388:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:440:3'): A-B-B, collapse to A-B ────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 4 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:440:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:492:3'): A-B-B ─────────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 4 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:492:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:544:3'): A+B-A ─────────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 4 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:544:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:596:3'): A-A-B ─────────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 4 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:596:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:648:3'): A-A-B, collapse to A-B ────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 4 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:648:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:701:3'): A+B-A+B, collapse to A+B ──────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 5 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:701:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) ── Error ('test-pathwaysLogical.R:754:3'): A+B-A+B ───────────────────────────── Error in `validateGeneratedCohortSet(cohort, soft = .softValidation)`: 5 observations outside observation period. Backtrace: ▆ 1. └─CDMConnector::cdmFromCon(...) at test-pathwaysLogical.R:754:3 2. └─CDMConnector::cdm_from_con(...) 3. └─omopgenerics::newCohortTable(...) 4. └─omopgenerics:::validateGeneratedCohortSet(cohort, soft = .softValidation) 5. └─omopgenerics:::checkObservationPeriod(cohort) 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) [ FAIL 16 | WARN 0 | SKIP 35 | PASS 68 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64