CRAN Package Check Results for Package cooccurNet

Last updated on 2020-08-13 06:47:23 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.6 4.84 76.36 81.20 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.6 4.01 58.64 62.65 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.6 104.14 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.6 95.32 NOTE
r-devel-windows-ix86+x86_64 0.1.6 14.00 116.00 130.00 OK
r-patched-linux-x86_64 0.1.6 4.79 75.64 80.43 NOTE
r-patched-solaris-x86 0.1.6 79.80 ERROR
r-release-linux-x86_64 0.1.6 3.94 74.27 78.21 NOTE
r-release-macos-x86_64 0.1.6 NOTE
r-release-windows-ix86+x86_64 0.1.6 15.00 114.00 129.00 OK
r-oldrel-macos-x86_64 0.1.6 NOTE
r-oldrel-windows-ix86+x86_64 0.1.6 7.00 88.00 95.00 OK

Check Details

Version: 0.1.6
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'cooccurNetwork' 'memory.limits'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.6
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘knitr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.6
Check: examples
Result: ERROR
    Running examples in ‘cooccurNet-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: coocnet
    > ### Title: coocnet
    > ### Aliases: coocnet
    >
    > ### ** Examples
    >
    > cooccurNetwork = coocnet(dataFile=getexample(dataType="protein"), dataType="protein")
    reading file......
    completed. (10,329)
    preprocess file......Error in if (pred >= memsize * alpha || ncol > 150 || (nrow > 30000 & :
     missing value where TRUE/FALSE needed
    Calls: coocnet ... cooccur.dataprepreprocess.preprocess -> inmemoryflag
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘Extending-cooccurNet.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Quitting from lines 176-178 (Extending-cooccurNet.Rmd)
    Error: processing vignette 'Extending-cooccurNet.Rmd' failed with diagnostics:
    missing value where TRUE/FALSE needed
    --- failed re-building ‘Extending-cooccurNet.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Extending-cooccurNet.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.6
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     ‘memory.limits’
Flavor: r-patched-solaris-x86