CRAN Package Check Results for Package hyperSpec

Last updated on 2023-06-01 06:58:35 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.100.0 18.65 319.16 337.81 NOTE
r-devel-linux-x86_64-debian-gcc 0.100.0 15.48 241.99 257.47 NOTE
r-devel-linux-x86_64-fedora-clang 0.100.0 411.75 NOTE
r-devel-linux-x86_64-fedora-gcc 0.100.0 400.81 NOTE
r-devel-windows-x86_64 0.100.0 18.00 385.00 403.00 NOTE
r-patched-linux-x86_64 0.100.0 NOTE
r-release-linux-x86_64 0.100.0 12.38 305.72 318.10 NOTE
r-release-macos-arm64 0.100.0 167.00 NOTE
r-release-macos-x86_64 0.100.0 650.00 NOTE
r-release-windows-x86_64 0.100.0 23.00 453.00 476.00 NOTE
r-oldrel-macos-arm64 0.100.0 132.00 OK
r-oldrel-macos-x86_64 0.100.0 278.00 OK
r-oldrel-windows-x86_64 0.100.0 24.00 460.00 484.00 OK

Additional issues

M1mac noSuggests

Check Details

Version: 0.100.0
Check: Rd files
Result: NOTE
    checkRd: (-1) palettes.Rd:25: Escaped LaTeX specials: \#
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 0.100.0
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
    --- re-building ‘chondro.pdf.asis’ using asis
    --- finished re-building ‘chondro.pdf.asis’
    
    --- re-building ‘fileio.pdf.asis’ using asis
    --- finished re-building ‘fileio.pdf.asis’
    
    --- re-building ‘baseline.Rnw’ using Sweave
    Loading required package: lattice
    Loading required package: grid
    Loading required package: ggplot2
    Loading required package: xml2
    Package hyperSpec, version 0.100.0
    
    To get started, try
     vignette ("hyperspec")
     package?hyperSpec
     vignette (package = "hyperSpec")
    
    If you use this package please cite it appropriately.
     citation("hyperSpec")
    will give you the correct reference.
    
    The project homepage is http://hyperspec.r-forge.r-project.org
    
    
    start: 300 support points
    Iteration 1: 146 support points
    Iteration 2: 85 support points
    Iteration 3: 44 support points
    Iteration 4: 26 support points
    Iteration 5: 12 support points
    Iteration 6: 7 support points
    Iteration 7: 2 support points
    Warning in max(x@wavelength) :
     no non-missing arguments to max; returning -Inf
    Warning in min(x@wavelength) :
     no non-missing arguments to min; returning Inf
    Warning in max(x@wavelength) :
     no non-missing arguments to max; returning -Inf
    Warning in min(x@wavelength) :
     no non-missing arguments to min; returning Inf
    Iteration 8: 0 support points
    spectrum 1: 2 support points, noise = 0.0, 8 iterations
    Fitting with npts.min = 15
    
    start: 300 support points
    spectrum 1: 20 support points, noise = 0.0, 5 iterations
    Fitting with npts.min = 15
    
    start: 300 support points
    spectrum 1: 26 support points, noise = 0.0, 5 iterations
    Fitting with npts.min = 15
    
    start: 300 support points
    spectrum 1: 25 support points, noise = 0.0, 5 iterations
    Fitting with npts.min = 5
    
    start: 100 support points
    spectrum 1: 99 support points, noise = 4.0, 2 iterations
    Fitting with npts.min = 15
    
    start: 300 support points
    Iteration 1: 153 support points
    Iteration 2: 93 support points
    Iteration 3: 54 support points
    Iteration 4: 38 support points
    Iteration 5: 32 support points
    Iteration 6: 29 support points
    Iteration 7: 29 support points
    spectrum 1: 29 support points, noise = 15.0, 7 iterations
    Error: processing vignette 'baseline.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'baseline.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `inputenx.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.5 \DeclareUnicodeCharacter
     {03BB}{\ensuremath{\lambda}}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘baseline.Rnw’
    
    --- re-building ‘flu.Rnw’ using Sweave
    Loading required package: lattice
    Loading required package: grid
    Loading required package: ggplot2
    Loading required package: xml2
    Package hyperSpec, version 0.100.0
    
    To get started, try
     vignette ("hyperspec")
     package?hyperSpec
     vignette (package = "hyperSpec")
    
    If you use this package please cite it appropriately.
     citation("hyperSpec")
    will give you the correct reference.
    
    The project homepage is http://hyperspec.r-forge.r-project.org
    
    
    Read 362 items
    Read 362 items
    Read 362 items
    Read 362 items
    Read 362 items
    Read 362 items
    Error: processing vignette 'flu.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'flu.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `inputenx.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.5 \DeclareUnicodeCharacter
     {03BB}{\ensuremath{\lambda}}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘flu.Rnw’
    
    --- re-building ‘hyperspec.Rnw’ using Sweave
    Loading required package: lattice
    Loading required package: grid
    Loading required package: ggplot2
    Loading required package: xml2
    Package hyperSpec, version 0.100.0
    
    To get started, try
     vignette ("hyperspec")
     package?hyperSpec
     vignette (package = "hyperSpec")
    
    If you use this package please cite it appropriately.
     citation("hyperSpec")
    will give you the correct reference.
    
    The project homepage is http://hyperspec.r-forge.r-project.org
    
    
    Loading required namespace: mvtnorm
    Loading required package: MASS
    Warning in predict.lda(lda, chondro) :
     variable names in 'newdata' do not match those in 'object'
    Warning in rm(chondro) : object 'chondro' not found
    Loading required package: baseline
    
    Attaching package: ‘baseline’
    
    The following object is masked from ‘package:stats’:
    
     getCall
    
    Warning in scores[, , 1:10] %*% loadings[1:10] :
     Dropping column(s) of y: filename, measurement
    Error: processing vignette 'hyperspec.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'hyperspec.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `inputenx.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.8 \DeclareUnicodeCharacter
     {03BB}{\ensuremath{\lambda}}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘hyperspec.Rnw’
    
    --- re-building ‘laser.Rnw’ using Sweave
    Loading required package: lattice
    Loading required package: grid
    Loading required package: ggplot2
    Loading required package: xml2
    Package hyperSpec, version 0.100.0
    
    To get started, try
     vignette ("hyperspec")
     package?hyperSpec
     vignette (package = "hyperSpec")
    
    If you use this package please cite it appropriately.
     citation("hyperSpec")
    will give you the correct reference.
    
    The project homepage is http://hyperspec.r-forge.r-project.org
    
    
    Loading required package: rgl
    plot chunk
    Warning in rgl.snapshot("fig-3D.png", fmt = "png", top = TRUE) :
     this build of rgl does not support snapshots
    Error: processing vignette 'laser.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'laser.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `inputenx.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.6 \DeclareUnicodeCharacter
     {03BB}{\ensuremath{\lambda}}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘laser.Rnw’
    
    --- re-building ‘plotting.Rnw’ using Sweave
    Loading required package: lattice
    Loading required package: grid
    Loading required package: ggplot2
    Loading required package: xml2
    Package hyperSpec, version 0.100.0
    
    To get started, try
     vignette ("hyperspec")
     package?hyperSpec
     vignette (package = "hyperSpec")
    
    If you use this package please cite it appropriately.
     citation("hyperSpec")
    will give you the correct reference.
    
    The project homepage is http://hyperspec.r-forge.r-project.org
    
    
    Warning in (function (object, model = spc ~ c, groups = NULL, func = NULL, :
     Intensity at first wavelengh only is used.
    Warning in hyperSpec:::.levelplot(x, data, ...) :
     Only first wavelength is used for plotting
    Warning in (function (x, y, z, subscripts = TRUE, at = pretty(z), points = TRUE, :
     The 'use.tripack' argument is deprecated and ignored. See ?panel.voronoi
    Warning in plotc(x, ...) : Intensity at first wavelengh only is used.
    Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col, :
     'x' values are not equispaced; output may be wrong
    Warning in (function (x, y, z, subscripts = TRUE, at = pretty(z), points = TRUE, :
     The 'use.tripack' argument is deprecated and ignored. See ?panel.voronoi
    Warning in hyperSpec:::.levelplot(x, data, ...) :
     Only first wavelength is used for plotting
    Loading required package: latticeExtra
    
    Attaching package: ‘latticeExtra’
    
    The following object is masked from ‘package:ggplot2’:
    
     layer
    
    Warning in (function (x, y, z, subscripts = TRUE, at = pretty(z), points = TRUE, :
     The 'use.tripack' argument is deprecated and ignored. See ?panel.voronoi
    Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col, :
     'x' values are not equispaced; output may be wrong
    Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col, :
     'y' values are not equispaced; output may be wrong
    Warning in (function (x, y, z, subscripts = TRUE, at = pretty(z), points = TRUE, :
     The 'use.tripack' argument is deprecated and ignored. See ?panel.voronoi
    Loading required package: rgl
    Warning in rgl.snapshot("fig-3D.png", fmt = "png", top = TRUE) :
     this build of rgl does not support snapshots
    Warning: Using `as.character()` on a quosure is deprecated as of rlang 0.3.0. Please use `as_label()` or
    `as_name()` instead.
    This warning is displayed once every 8 hours.
    Error: processing vignette 'plotting.Rnw' failed with diagnostics:
    Running 'texi2dvi' on 'plotting.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `inputenx.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.7 \DeclareUnicodeCharacter
     {03BB}{\ensuremath{\lambda}}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    --- failed re-building ‘plotting.Rnw’
    
    SUMMARY: processing the following files failed:
     ‘baseline.Rnw’ ‘flu.Rnw’ ‘hyperspec.Rnw’ ‘laser.Rnw’ ‘plotting.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-x86_64