CRAN Package Check Results for Package immunarch

Last updated on 2023-02-02 06:54:55 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.0 76.18 292.55 368.73 OK
r-devel-linux-x86_64-debian-gcc 0.9.0 62.00 329.68 391.68 OK
r-devel-linux-x86_64-fedora-clang 0.9.0 611.13 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9.0 603.43 OK
r-devel-windows-x86_64 0.9.0 120.00 517.00 637.00 NOTE
r-patched-linux-x86_64 0.9.0 79.58 417.74 497.32 OK
r-release-linux-x86_64 0.9.0 69.25 368.26 437.51 OK
r-release-macos-arm64 0.9.0 172.00 NOTE
r-release-macos-x86_64 0.9.0 209.00 NOTE
r-release-windows-x86_64 0.9.0 137.00 519.00 656.00 NOTE
r-oldrel-macos-arm64 0.9.0 169.00 NOTE
r-oldrel-macos-x86_64 0.9.0 203.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9.0 143.00 470.00 613.00 ERROR

Check Details

Version: 0.9.0
Check: package dependencies
Result: NOTE
    Imports includes 38 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.9.0
Check: installed package size
Result: NOTE
     installed size is 6.6Mb
     sub-directories of 1Mb or more:
     data 3.3Mb
     doc 1.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.0
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'immunarch-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: repLoad
    > ### Title: Load immune repertoire files into the R workspace
    > ### Aliases: repLoad
    >
    > ### ** Examples
    >
    > # To load the data from a single file (note that you don't need to specify the data format):
    > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/Sample1.tsv.gz")
    > immdata <- repLoad(file_path)
    
    == Step 1/3: loading repertoire files... ==
    
    Processing "<initial>" ...
     -- [1/1] Parsing "D:/temp/RtmpsZaN2D/RLIBS_12cf4706c502c/immunarch/extdata/io/Sample1.tsv.gz" -- immunarch
    
    == Step 2/3: checking metadata files and merging files... ==
    
    Processing "<initial>" ...
     -- Metadata file not found; creating a dummy metadata...
    
    == Step 3/3: processing paired chain data... ==
    
    Done!
    
    >
    > # Suppose you have a following structure in your folder:
    > # >_ ls
    > # immunoseq1.txt
    > # immunoseq2.txt
    > # immunoseq3.txt
    > # metadata.txt
    >
    > # To load the whole folder with every file in it type:
    > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/")
    > immdata <- repLoad(file_path)
    
    == Step 1/3: loading repertoire files... ==
    
    Error in .split_to_batches(.path, "<initial>") :
     Input file or directory not found: D:/temp/RtmpsZaN2D/RLIBS_12cf4706c502c/immunarch/extdata/io/
    Calls: repLoad -> .split_to_batches
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.9.0
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'immunarch-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: repLoad
    > ### Title: Load immune repertoire files into the R workspace
    > ### Aliases: repLoad
    >
    > ### ** Examples
    >
    > # To load the data from a single file (note that you don't need to specify the data format):
    > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/Sample1.tsv.gz")
    > immdata <- repLoad(file_path)
    
    == Step 1/3: loading repertoire files... ==
    
    Processing "<initial>" ...
     -- [1/1] Parsing "D:/temp/RtmpsZaN2D/RLIBS_12cf4706c502c/immunarch/extdata/io/Sample1.tsv.gz" -- immunarch
    
    == Step 2/3: checking metadata files and merging files... ==
    
    Processing "<initial>" ...
     -- Metadata file not found; creating a dummy metadata...
    
    == Step 3/3: processing paired chain data... ==
    
    Done!
    
    >
    > # Suppose you have a following structure in your folder:
    > # >_ ls
    > # immunoseq1.txt
    > # immunoseq2.txt
    > # immunoseq3.txt
    > # metadata.txt
    >
    > # To load the whole folder with every file in it type:
    > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/")
    > immdata <- repLoad(file_path)
    
    == Step 1/3: loading repertoire files... ==
    
    Error in .split_to_batches(.path, "<initial>") :
     Input file or directory not found: D:/temp/RtmpsZaN2D/RLIBS_12cf4706c502c/immunarch/extdata/io/
    Calls: repLoad -> .split_to_batches
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64