BIGDAWG: Case-Control Analysis of Multi-Allelic Loci

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.

Version: 3.0.3
Depends: R (≥ 3.5.0)
Imports: XML, httr, haplo.stats, parallel
Suggests: knitr, rmarkdown
Published: 2021-11-17
Author: Derek Pappas, Steve Mack, Jill Hollenbach
Maintainer: Steve Mack <Steven.Mack at ucsf.edu>
BugReports: https://github.com/IgDAWG/BIGDAWG/issues
License: GPL (≥ 3)
URL: http://tools.immunogenomics.org/, https://github.com/IgDAWG/BIGDAWG
NeedsCompilation: no
Materials: NEWS
CRAN checks: BIGDAWG results

Documentation:

Reference manual: BIGDAWG.pdf
Vignettes: BIGDAWG
GLSconvert

Downloads:

Package source: BIGDAWG_3.0.3.tar.gz
Windows binaries: r-devel: BIGDAWG_3.0.3.zip, r-release: BIGDAWG_3.0.3.zip, r-oldrel: BIGDAWG_3.0.3.zip
macOS binaries: r-release (arm64): BIGDAWG_3.0.3.tgz, r-release (x86_64): BIGDAWG_3.0.3.tgz, r-oldrel: BIGDAWG_3.0.3.tgz
Old sources: BIGDAWG archive

Reverse dependencies:

Reverse imports: pould, SSHAARP

Linking:

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