DAISIEprep: Extracts Phylogenetic Island Community Data from Phylogenetic Trees

Extracts colonisation and branching times of island species to be used for analysis in the R package 'DAISIE'. It uses phylogenetic and endemicity data to extract the separate island colonists and store them.

Version: 0.3.2
Depends: R (≥ 4.0)
Imports: methods, ape, phylobase, ggplot2, scales, ggtree, DAISIE, castor, tibble, rlang
Suggests: testthat (≥ 3.0.0), knitr, rmarkdown, covr, diversitree, corHMM, tidyr, dplyr, ggimage
Published: 2023-04-25
Author: Joshua W. Lambert ORCID iD [aut, cre], Luis Valente ORCID iD [aut], Pedro Santos Neves ORCID iD [aut], Lizzie Roeble ORCID iD [aut], Theo Pannetier ORCID iD [aut]
Maintainer: Joshua W. Lambert <j.w.l.lambert at rug.nl>
BugReports: https://github.com/joshwlambert/DAISIEprep/issues
License: GPL (≥ 3)
URL: https://github.com/joshwlambert/DAISIEprep, https://joshwlambert.github.io/DAISIEprep/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: DAISIEprep results

Documentation:

Reference manual: DAISIEprep.pdf
Vignettes: Performance
Sensitivity
DAISIEprep Tutorial

Downloads:

Package source: DAISIEprep_0.3.2.tar.gz
Windows binaries: r-devel: DAISIEprep_0.3.2.zip, r-release: DAISIEprep_0.3.2.zip, r-oldrel: DAISIEprep_0.3.2.zip
macOS binaries: r-release (arm64): DAISIEprep_0.3.2.tgz, r-oldrel (arm64): DAISIEprep_0.3.2.tgz, r-release (x86_64): DAISIEprep_0.3.2.tgz

Linking:

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