DGEobj.utils: Differential Gene Expression (DGE) Analysis Utility Toolkit

Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) <doi:10.12688/f1000research.9005.3>). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results.

Version: 1.0.3
Depends: R (≥ 3.5.0)
Imports: assertthat, DGEobj (≥ 1.0.3), dplyr, statmod, stats, stringr, tidyr, edgeR, IHW, limma, qvalue, RNASeqPower, sva, zFPKM
Suggests: canvasXpress, conflicted, glue, ggplot2, knitr, rmarkdown, testthat, biomaRt
Published: 2021-04-28
Author: John Thompson [aut], Connie Brett [aut, cre], Isaac Neuhaus [aut], Ryan Thompson [aut]
Maintainer: Connie Brett <connie at aggregate-genius.com>
License: GPL-3
NeedsCompilation: no
Language: en-US
Materials: README NEWS
CRAN checks: DGEobj.utils results

Documentation:

Reference manual: DGEobj.utils.pdf
Vignettes: DGEobj.utils: An Example Workflow

Downloads:

Package source: DGEobj.utils_1.0.3.tar.gz
Windows binaries: r-devel: DGEobj.utils_1.0.3.zip, r-release: DGEobj.utils_1.0.3.zip, r-oldrel: DGEobj.utils_1.0.3.zip
macOS binaries: r-release (arm64): not available, r-release (x86_64): not available, r-oldrel: not available

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