RaceID: Identification of Cell Types and Inference of Lineage Trees from Single-Cell RNA-Seq Data

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <doi:10.1038/nmeth.4662>.

Version: 0.2.1
Depends: R (≥ 3.3)
Imports: coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices, ica, igraph, irlba, locfit, methods, MASS, Matrix, NlcOptim, parallel, pheatmap, propr, quadprog, randomForest, Rcpp, RColorBrewer, Rtsne, umap, vegan
LinkingTo: Rcpp (≥ 0.11.0)
Suggests: batchelor, DESeq2, destiny, knitr, rmarkdown, SummarizedExperiment
Published: 2020-08-10
Author: Dominic Grün
Maintainer: Dominic Grün <dominic.gruen at gmail.com>
License: GPL-3
NeedsCompilation: yes
CRAN checks: RaceID results

Downloads:

Reference manual: RaceID.pdf
Vignettes: An introduction to RaceID and StemID.
Package source: RaceID_0.2.1.tar.gz
Windows binaries: r-devel: RaceID_0.2.1.zip, r-release: RaceID_0.2.1.zip, r-oldrel: RaceID_0.2.1.zip
macOS binaries: r-release: RaceID_0.2.1.tgz, r-oldrel: RaceID_0.2.1.tgz
Old sources: RaceID archive

Linking:

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