SAMtool: Stock Assessment Methods Toolkit

Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.

Version: 1.2.3
Depends: R (≥ 3.5.0), MSEtool (≥ 3.0.0)
Imports: TMB, corpcor, dplyr, gplots, graphics, methods, rmarkdown, snowfall, stats, utils, vars
LinkingTo: TMB, RcppEigen
Suggests: abind, caret, covr, ggplot2, knitr, mvtnorm, numDeriv, reshape2, shiny, testthat
Published: 2021-11-28
Author: Quang Huynh [aut, cre], Tom Carruthers [aut], Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang at bluematterscience.com>
BugReports: https://github.com/Blue-Matter/SAMtool/issues
License: GPL-3
URL: https://github.com/Blue-Matter/SAMtool
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: SAMtool results

Documentation:

Reference manual: SAMtool.pdf
Vignettes: Introduction to SAMtool and model-based MPs

Downloads:

Package source: SAMtool_1.2.3.tar.gz
Windows binaries: r-devel: SAMtool_1.2.2.zip, r-devel-UCRT: SAMtool_1.2.3.zip, r-release: SAMtool_1.2.3.zip, r-oldrel: SAMtool_1.2.3.zip
macOS binaries: r-release (arm64): SAMtool_1.2.2.tgz, r-release (x86_64): SAMtool_1.2.3.tgz, r-oldrel: SAMtool_1.2.3.tgz
Old sources: SAMtool archive

Reverse dependencies:

Reverse depends: openMSE

Linking:

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