iNEXT.beta3D: Interpolation and Extrapolation with Beta Diversity for Three Dimensions of Biodiversity

As a sequel to 'iNEXT', the 'iNEXT.beta3D' package provides functions to compute standardized taxonomic, phylogenetic, and functional diversity (3D) estimates with a common sample size (for alpha and gamma diversity) or sample coverage (for alpha, beta, gamma diversity as well as dissimilarity or turnover indices). Hill numbers and their generalizations are used to quantify 3D and to make multiplicative decomposition (gamma = alpha x beta). The package also features size- and coverage-based rarefaction and extrapolation sampling curves to facilitate rigorous comparison of beta diversity across datasets. See Chao et al. (2023) <doi:10.1002/ecm.1588> for more details.

Version: 1.0.2
Depends: R (≥ 4.0)
Imports: stats, magrittr, ggplot2, abind, iNEXT.3D, future.apply, tibble, dplyr, tidytree, tidyr, phyclust, ape
Suggests: testthat, knitr, rmarkdown, ggthemes
Published: 2024-04-17
Author: Anne Chao [aut, cre], KaiHsiang Hu [ctb]
Maintainer: Anne Chao <chao at stat.nthu.edu.tw>
BugReports: https://github.com/AnneChao/iNEXT.beta3D/issues
License: GPL (≥ 3)
URL: https://sites.google.com/view/chao-lab-website/software/inext-beta3d
NeedsCompilation: no
Citation: iNEXT.beta3D citation info
Materials: NEWS
CRAN checks: iNEXT.beta3D results

Documentation:

Reference manual: iNEXT.beta3D.pdf
Vignettes: iNEXT.beta3D Vignette (Feb. 2024)

Downloads:

Package source: iNEXT.beta3D_1.0.2.tar.gz
Windows binaries: r-prerel: iNEXT.beta3D_1.0.1.zip, r-release: iNEXT.beta3D_1.0.1.zip, r-oldrel: iNEXT.beta3D_1.0.1.zip
macOS binaries: r-prerel (arm64): iNEXT.beta3D_1.0.2.tgz, r-release (arm64): iNEXT.beta3D_1.0.2.tgz, r-oldrel (arm64): iNEXT.beta3D_1.0.2.tgz, r-prerel (x86_64): iNEXT.beta3D_1.0.2.tgz, r-release (x86_64): iNEXT.beta3D_1.0.2.tgz
Old sources: iNEXT.beta3D archive

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