parmigene: Parallel Mutual Information Estimation for Gene Network Reconstruction

Parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks (Sales et al, 2011 <doi:10.1093/bioinformatics/btr274>).

Version: 1.1.0
Published: 2020-08-03
Author: Gabriele Sales, Chiara Romualdi
Maintainer: Gabriele Sales <gabriele.sales at unipd.it>
BugReports: https://github.com/sales-lab/parmigene/issues
License: AGPL-3
URL: https://github.com/sales-lab/parmigene
NeedsCompilation: yes
Materials: README
CRAN checks: parmigene results

Downloads:

Reference manual: parmigene.pdf
Package source: parmigene_1.1.0.tar.gz
Windows binaries: r-devel: parmigene_1.1.0.zip, r-release: parmigene_1.0.2.zip, r-oldrel: parmigene_1.1.0.zip
macOS binaries: r-release: parmigene_1.1.0.tgz, r-oldrel: parmigene_1.1.0.tgz
Old sources: parmigene archive

Reverse dependencies:

Reverse depends: ESEA, synRNASeqNet
Reverse imports: DysPIA, mAPKL, MetNet, MoonlightR, PAC
Reverse suggests: TCGAbiolinks

Linking:

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