Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.
| Version: |
1.3.8 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
Rcpp (≥ 0.12.10), RColorBrewer, graphics, grDevices |
| LinkingTo: |
Rcpp, RcppEigen |
| Suggests: |
BEDMatrix, testthat, knitr, rmarkdown, lfa, bnpsd |
| Published: |
2021-02-11 |
| Author: |
Alejandro Ochoa 
[aut, cre],
John D. Storey
[aut] |
| Maintainer: |
Alejandro Ochoa <alejandro.ochoa at duke.edu> |
| BugReports: |
https://github.com/StoreyLab/popkin/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/StoreyLab/popkin/ |
| NeedsCompilation: |
yes |
| Citation: |
popkin citation info |
| Materials: |
README NEWS |
| CRAN checks: |
popkin results |