ribd: Pedigree-based Relatedness Coefficients

Recursive algorithms for computing various relatedness coefficients, including pairwise kinship, kappa and identity coefficients. Both autosomal and X-linked coefficients are computed. Founders are allowed to be inbred, enabling construction of any given kappa coefficients (Vigeland (2020) <doi:10.1007/s00285-020-01505-x>). In addition to the standard pairwise coefficients, 'ribd' also computes a range of lesser-known coefficients, including generalised kinship coefficients (Karigl (1981) <doi:10.1111/j.1469-1809.1981.tb00341.x>; Weeks and Lange (1988) <https:www.ncbi.nlm.nih.gov/pmc/articles/PMC1715269>), two-locus coefficients (Thompson (1988) <doi:10.1093/imammb/5.4.261>) and multi-person coefficients. This package is part of the 'ped suite', a collection of packages for pedigree analysis in R. Several methods of 'ribd' are featured in the online app 'QuickPed' available at <https://magnusdv.shinyapps.io/quickped>.

Version: 1.3.1
Depends: pedtools, R (≥ 3.5.0)
Imports: glue, kinship2, slam
Suggests: identity, testthat
Published: 2021-11-26
Author: Magnus Dehli Vigeland ORCID iD [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no>
License: GPL-3
URL: https://github.com/magnusdv/ribd, https://magnusdv.github.io/pedsuite/
NeedsCompilation: no
Language: en-GB
Materials: README NEWS
CRAN checks: ribd results

Documentation:

Reference manual: ribd.pdf

Downloads:

Package source: ribd_1.3.1.tar.gz
Windows binaries: r-devel: ribd_1.3.1.zip, r-release: ribd_1.3.1.zip, r-oldrel: ribd_1.3.1.zip
macOS binaries: r-release (arm64): ribd_1.3.1.tgz, r-release (x86_64): ribd_1.3.1.tgz, r-oldrel: ribd_1.3.1.tgz
Old sources: ribd archive

Reverse dependencies:

Reverse depends: pedsuite
Reverse imports: forrel, ibdsim2, verbalisr

Linking:

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