tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

Methods and feature set definitions for feature or gene set enrichment analysis in transcriptional and metabolic profiling data. Package includes tests for enrichment based on ranked lists of features, functions for visualisation and multivariate functional analysis. See Zyla et al (2019) <doi:10.1093/bioinformatics/btz447>.

Version: 0.50.13
Depends: R (≥ 2.10)
Imports: beeswarm, tagcloud, XML, methods, plotwidgets, RColorBrewer, gplots, tibble, pheatmap, ggplot2, tidyr, purrr, rlang, tidyselect, ggrepel
Suggests: testthat, knitr, rmarkdown, dplyr, pander, cowplot
Published: 2023-03-31
DOI: 10.32614/CRAN.package.tmod
Author: January Weiner ORCID iD [aut, cre]
Maintainer: January Weiner <january.weiner at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)]
NeedsCompilation: no
Citation: tmod citation info
Materials: README ChangeLog
In views: Omics
CRAN checks: tmod results


Reference manual: tmod.pdf
Vignettes: tmod: Analysis of Gene Set Enrichments


Package source: tmod_0.50.13.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): tmod_0.50.13.tgz, r-oldrel (arm64): tmod_0.50.13.tgz, r-release (x86_64): tmod_0.50.13.tgz, r-oldrel (x86_64): tmod_0.50.13.tgz
Old sources: tmod archive

Reverse dependencies:

Reverse imports: GeneSelectR


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